species:   Artha
pid:       MI0008303
parent:    ath-MIR1886
paralog:   
locus:     2:15611870-15611982
matures:   ['UGAGAGAAGUGAGAUGAAAUC', 'UUUCAUCUUACUUCCCUCAUG']
srr:       SRR9216050
genome:    /Users/jax/+Genomes/Plant_genomes/Artha.TAIR10_chr_all.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Artha.SRR9216050.cram 2:15611870-15611982

0 out of bounds
65 alignments
65 proper strand
52 stranded perfect matches

          ***********************                                                ***********************         
GAGUGAGAGAAGUGAGAUGAAAUCUUUGAUUGGAAAUUUCAUGUAGACGAUGCUAUCACCCCAUAUGACCAAAAGAAAUUCCCAAUUAAAGAUUUCAUCUUACUUCCCUCAUG
..(((((.(((((((((((((((((((((((((.((((((.........(((.........)))..........)))))).))))))))))))))))))))))))).))))).
---UGAGAGAAGUGAGAUGAAAUC----------------------------------------------------------------------------------------- l=21 a=17 c
--------------------------------------------------------------------------------------------UUUCAUCUUACUUCCCUCAUG l=21 a=5 c*
------------UGAGAUGAAAUCUUUGAUUGG-------------------------------------------------------------------------------- l=21 a=23 ma
-----------------------------------------------------------------------------------AAUUAAAGAUUUCAUCUUACU--------- l=21 a=0 ma*

---UGAGAGAAGUGAGAUGAAAUC----------------------------------------------------------------------------------------- l=21 a=17 (c)
---UGAGAGgAGUGAGAUGAAAUC----------------------------------------------------------------------------------------- l=21 a=1 
-----AGAGAAGUGAGAUGAAAUC----------------------------------------------------------------------------------------- l=19 a=2 
-----AGAGAAGUGAGAUGAAAUCUU--------------------------------------------------------------------------------------- l=21 a=2 
----------AGUGAGAUGAAAUCUUUGAUUGG-------------------------------------------------------------------------------- l=23 a=1 
----------AGUGAGAUGAAAUCUUUGAUUGa-------------------------------------------------------------------------------- l=23 a=2 
------------UGAGAUGAAAUCUUUGAUc---------------------------------------------------------------------------------- l=19 a=1 
------------UGAGAUGAAAUCUUUGAUU---------------------------------------------------------------------------------- l=19 a=1 
------------UGAGAUGAAAUCUUUGAUUGG-------------------------------------------------------------------------------- l=21 a=23 (ma)
------------UGAGAUGAAAUCUUUGAcUGG-------------------------------------------------------------------------------- l=21 a=1 
------------UGAGAUGAAAUCUUUGAUUGa-------------------------------------------------------------------------------- l=21 a=6 
------------UGAGAUGAAAUCUUUGAUUGGu------------------------------------------------------------------------------- l=22 a=1 
--------------------AAUCUUUGAUUGGAAAUUUCA------------------------------------------------------------------------ l=21 a=1 
--------------------------------------------------------------------------------------------UUUCAUCUUACUUCCCUCAUG l=21 a=5 (c*)
--------------------------------------------------------------------------------------------UUUCAUCUUACUUCCCUCAUa l=21 a=1 

mb-01111
ax-1011011
ku-00
ss-111111111100
fn-111
